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SRX22985833: TraDIS of E. coli strain MS69-1
1 ILLUMINA (Illumina NovaSeq 6000) run: 19.9M spots, 6G bases, 1.7Gb downloads

Design: Nextera-TruSeq
Submitted by: University of Illinois at Chicago
Study: E. coli TraDIS
show Abstracthide Abstract
We conducted Transposon Directed Insertion-Site Sequencing (TraDIS) on three different strains of Escherichia coli. We determined the number of unique mutants: 1) as a function of recovery time after electroporation (0.5, 1 or 2 hrs); and 2) as a function of selection medium (agar plates or liquid broth). For the recovery analysis, we also compared the recovery of transposon-DNA junctions based on the layout of sequencing library fragments (Nextera-TruSeq hybrid, or TruSeq-TruSeq).
Sample: MIGS Cultured Bacterial/Archaeal sample from Escherichia coli MS 69-1
SAMN00189184 • SRS150866 • All experiments • All runs
Library:
Name: HM347-liq-6.5h-Rep1
Instrument: Illumina NovaSeq 6000
Strategy: Tn-Seq
Source: GENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 19.9M spots, 6G bases, 1.7Gb
Run# of Spots# of BasesSizePublished
SRR2730852219,895,1796G1.7Gb2024-03-21

ID:
31057252

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